Algebraic statistics for computational biology
- نوع فایل : کتاب
- زبان : انگلیسی
- مؤلف : Lior Pachter; Bernd Sturmfels
- ناشر : Cambridge ; New York : Cambridge University Press,
- چاپ و سال / کشور: 2005
- شابک / ISBN : 9780521857000
Description
Statistics / L. Pachter and B. Sturmfels -- Computation / L. Pachter and B. Sturmfels -- Algebra / L. Pachter and B. Sturmfels -- Biology / L. Pachter and B. Sturmfels -- Parametric inference / R. Mihaescu -- Polytope propagation on graphs / M. Joswig -- Parametric sequence alignment / C. Dewey and K. Woods -- Bounds for optimal sequence alignment / S. Elizalde and F. Lam -- Inference functions / S. Elizalde -- Geometry of Markov chains / E. Kuo -- Equations defining hidden Markov models / N. Bray and J. Morton -- The EM algorithm for hidden Markov models / I.B. Hallgrímsdóttir, R.A. Milowski and J. Yu -- Homology mapping with Markov random fields / A. Caspi -- Mutagenetic tree models / N. Beerenwinkel and M. Drton -- Catalog of small trees / M. Casanellas, L.D. Garcia and S. Sullivant -- The strand symmetric model / M. Casanellas and S. Sullivant -- Extending tree models to splits netweorks / D. Bryant -- Small trees and generalized neighbor-joining / M. Contois and D. Levy -- Tree construction using Singular Value Decomposition / N. Eriksson -- Applications of interval methods to phylogenetics / R. Sainudiin and R. Yoshida -- Analysis of point mutations in vertebrate genomes / J. Al-Aidroos and S. Snir -- Ultra-conserved elements in vertebrate and fly genomes / M. Drton, N. Eriksson and G. Leung.
"The quantitative analysis of biological sequence data is based on methods from statistics coupled with efficient algorithms from computer science. Algebra provides a framework for unifying many of the seemingly disparate techniques used by computational biologists. This book offers an introduction to this mathematical framework and describes tools from computational algebra for designing new algorithms for exact, accurate results. These algorithms can be applied to biological problems such as aligning genomes, finding genes, and constructing phylogenies."--BOOK JACKET.
