Methods of microarray data analysis II : papers from CAMDA'01
- نوع فایل : کتاب
- زبان : انگلیسی
- مؤلف : Simon M Lin; Kimberly F Johnson
- ناشر : Boston : Kluwer Academic Publishers, cop
- چاپ و سال / کشور: 2002
- شابک / ISBN : 9781402071119
Description
Contributors vii Acknowledgements ix Preface xi Introduction 1 AN INTRODUCTION TO DNA MICROARRAYS Patrick McConnell, Kimberly Johnson, David J. Lockhart 9 EXPERIMENTAL DESIGN FOR GENE MICROARRAY EXPERIMENTS AND DIFFERENTIAL EXPRESSION ANALYSIS G.V. Bobashev, S. Das, A. Das 23 MICROARRAY DATA PROCESSING AND ANALYSIS Joaquín Dopazo 43 BIOLOGY-DRIVEN CLUSTERING OF MICROARRAY DATA Kevin R. Coombes, Keith A. Baggerly, David N. Stivers, Jing Wang, David Gold, Hsi-Guang Sung, and Sang-Joon Lee 65 EXTRACTING GLOBAL STRUCTURE FROM GENE EXPRESSION PROFILES Charless Fowlkes, Qun Shan, Serge Belongie, and Jitendra Malik 81 vi Contents SUPERVISED NEURAL NETWORKS FOR CLUSTERING CONDITIONS IN DNA ARRAY DATA AFTER REDUCING NOISE BY CLUSTERING GENE EXPRESSION PROFILES Alvaro Mateos, Javier Herrero, Javier Tamames and Joaquín Dopazo 91 BAYESIAN DECOMPOSITION ANALYSIS OF GENE EXPRESSION IN YEAST DELETION MUTANTS Ghislain Bidaut1, Thomas D. Moloshok, Jeffrey D. Grant, Frank J. Manion1, and Michael F. Ochs 105 USING FUNCTIONAL GENOMIC UNITS TO CORROBORATE USER EXPERIMENTS WITH THE ROSETTA COMPENDIUM Simon M. Lin, Xuejun Liao, Patrick McConnell, Korkut Vata, Lawrence Carin, and Pascal Goldschmidt 123 FISHING EXPEDITION - A SUPERVISED APPROACH TO EXTRACT PATTERNS FROM A COMPENDIUM OF EXPRESSION PROFILES Zhen Zhang, Grier Page, Hong Zhang 139 MODELING PHARMACOGENOMICS OF THE NCI-60 ANTICANCER DATA SET: UTILIZING KERNEL PLS TO CORRELATE THE MICROARRAY DATA TO THERAPEUTIC RESPONSES Nilanjan Dasgupta, Simon M. Lin and Lawrence Carin 151 ANALYSIS OF GENE EXPRESSION PROFILES AND DRUG ACTIVITY PATTERNS BY CLUSTERING AND BAYESIAN NETWORK LEARNING Jeong-Ho Chang, Kyu-Baek Hwang, and Byoung-Tak Zhang 169 EVALUATION OF CURRENT METHODS OF TESTING DIFFERENTIAL GENE EXPRESSION AND BEYOND Yi-Ju Li, Ling Zhang, Marcy C. Speer, and Eden R. Martin 185 EXTRACTING KNOWLEDGE FROM GENOMIC EXPERIMENTS BY INCORPORATING THE BIOMEDICAL LITERATURE James P. Sluka 195 Index 213
