Epigenetics protocols

Methods of epigenetic analysis / Trygve O. Tollefsbol -- Chromatin immunoprecipitation assays / Yan Yan, Haobin Chen, and Max Costa -- Native chromatin immunoprecipitation / Alan W. Thorne, Fiona A. Myers, and Tim R. Hebbes -- Q-PCR in combination with ChIP assays to detect changes in chromatin acetylation / Ryan A. Irvine and Chin-Lin Hsieh -- Restriction endonuclease accessibility as a determinant of altered chromatin structure / William M. Hempel and Pierre Ferrier -- Measuring changes in chromatin using micrococcal nuclease / Nicolas Steward and Hiroshi Sano -- DNasel hypersensitivity analysis of chromatin structure / Qianjin Lu and Bruce Richardson -- Inhibition of histone deacetylases / Cheng Liu and Dawei Xu -- Site-specific analysis of histone methylation and acetylation / David Umlauf, Yuji Goto, and Robert Feil -- Analysis of mammalian telomere position effect / Joseph A. Baur, Woodring E. Wright, and Jerry W. Shay -- Activity assays for poly-ADP ribose polymerase 1 / Eva Kirsten ... [et al.] -- Multigenerational selection and detection of altered histone acetylation and methylation patterns: toward a quantitative epigenetics in Drosophila / Mark D. Garfinkel ... [et al.]. Profiling DNA methylation by bisulfite genomic sequencing: problems and solutions / Liang Liu ... [et al.] -- Methylation-sensitive single-strand conformation analysis: a rapid method to screen for and analyze DNA methylation / Jean Benhattar and Geneviève Clément -- SIRPH analysis, SNuPE with IP-RP-HPLC for quantitative measurements of DNA methylation at specific CpG sites / Osman El-Maarri -- Real-time PCR-based assay for quantitative determination of methylation status / Ulrich Lehmann and Hans Kreipe -- Denaturing gradient gel electrophoresis to detect methylation changes in DNA / Masahiko Shiraishi -- Photocrosslinking oligonucleotide hybridization assay for concurrent gene dosage and CpG methylation analysis / Risa Peoples, Michael Wood, and Reuel Van Atta -- Methylation-specific oligonucleotide microarray / Pearlly S. Yan, Susan H. Wei, and Tim Hui-Ming Huang -- Methylation-specific PCR in situ hybridization / Gerard J. Nuovo -- Relative quantitation of DNA methyltransferase mRNA by real-time RT-PCR assay / John Attwood and Bruce Richardson -- DMB (DNMT-magnetic beads) assay: measuring DNA methyltransferase activity in vitro / Tomoki Yokochi and Keith D. Robertson